Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYMKKLKFITLTLAIIITLPMLQSCLDDNDHQSRSLVISTIN---QISEDSKEFYFTLDNGKTMFPSNSQAWGGEKFENGQRAFVIFNELEQPVNGYDYNIQVRDITKVLTKEIVTMDDEENTEEKIGDDKINATYMWISKDKKYLTIEFQYYSTHSEDKKHFLNLVINNKEADSAAENEDNTDDEYINLEFRHNSERDSPDHLGEGYVSFKLDKIEEQIEGKKGLNIRVRTLYDGIKNYKVQFP
3K6O Chain:A ((14-206))
----------------------------------TVTIAMATVEKQPQYDAP--YLVLDNGEKLW-VVQHIVPYRDLKAGERIFGNYSFLEAGESGFAYNIRLNDYTLVPVQKIIGLN--PDNMDSIGNMKVQIKDMWPSDD--YLNVRFML--NFPSPQKPILNLVVN--------EMIPWTKDGYAHLELRYNN-NGSQGRLVPGMVSFKLDDYSPENSELKGIKVLVNPVDGEEKTYIFSYP
General information:
TITO was launched using:
RESULT:
Template:
3K6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59012 for 1349 contacts (-43.7/contact) +
2D Compatibility (PS) -20584 + (NN) -7936 + (LL) 3984
1D Compatibility (HY) -15200 + (ID) 3000
Total energy: -101748.0 ( -75.42 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_3K6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K6O-query.scw
PDB file :
Tito_Scwrl_3K6O.pdb
: