Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQA---VTELSKIKK
4JA9 Chain:A ((14-133))
----------LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIVK
General information:
TITO was launched using:
RESULT:
Template:
4JA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5257 for 897 contacts (5.9/contact) +
2D Compatibility (PS) -12833 + (NN) -6687 + (LL) 316
1D Compatibility (HY) -8400 + (ID) 2300
Total energy: -24647.0 ( -27.48 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_4JA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JA9-query.scw
PDB file :
Tito_Scwrl_4JA9.pdb
: