Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRILSLLGVIALFLGVILVSCGNDDDNKNTTGVHKIVVEQSGNTDDFDLNIAFGAANTGGVAKLYNENGEYLGDSYLVNKVTENKISCQTGKEGSMMTCAGSVISTSEQAGKKLKISVIAYIDNKEVNRLEKEYITKGSTLVENFSVSTTSVE
3U6G Chain:A ((35-154))
--------------------------------TGIHKIVIQQSGDTDSFEVSVSIGGADKGGPAKLYNDKGEYIGDSYSA-QIRTATMSCCTNGNAFFMTCAGSVSSISE-AGKRLHITVIGYIDDKEVNRLEKEYITDGNTLIETFSVSTKEI-
General information:
TITO was launched using:
RESULT:
Template:
3U6G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13721 for 852 contacts (-16.1/contact) +
2D Compatibility (PS) -12922 + (NN) -4987 + (LL) 2320
1D Compatibility (HY) -1600 + (ID) 1600
Total energy: -32510.0 ( -38.16 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_3U6G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U6G-query.scw
PDB file :
Tito_Scwrl_3U6G.pdb
: