Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | QDTFIAAVYEHAAILPNATLTPVSREEALALMNRNLDILEGAITSAADQGAHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNNRNRFGQTPVQERLSCLAKNNSIYVVANIGDKKPCDTSDPQCPPDGRYQYNTDVVFDSQGKLVARYHKQNLFMGENQFNVPKEPEIVTFNTTFGSFGIFTCFDILFHDPAVTLVKDFHVDTIVFPTAWMNVLPHLSAVEFHSAWAMGMRVNFLASNIHYPSKKMTGSGIYAPNSSRAFHYDMKTEEGKLLLSQLDSHPSHSAVVNWTSYASSIEALSSGNKEFKGTVFFDEFTFVKLTGVAGNYTVCQKDLCCHLSYKMSENIPNEVYALGAFDGLHTVEGRYYLQICTLLKCKTTNLNTCGDSAETASTRFEMFSLSGTFGTQYVFPEVLLSENQLAPGEFQV-STDGRLFSLKPTSGPVLTVTLFGRLYEKDWASNASSG |
2DYU Chain:A ((13-334)) | --------GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAG--YPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPG-----------------KETELYAKACKEAKVYGVFSIMERNP---------DSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYK-GCNVYIRISGYST--------QVNDQWILTNRSNAWHN------------LMYTVSVNLAGYDNVFYYFG------------EGQICNFDG------TTLVQGHRNPWEIVTGEIYPKMADNARLSWG------------------LENNIYNLGHRGYVAKPG-------------------------------------GEHDAGLTYIKDLAAGKYKLPWEDHMKIKDGSIYGYPTTGGR------FGK------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2DYU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -87139 for 2720 contacts (-32.0/contact) +
2D Compatibility (PS) -35059 + (NN) -21227 + (LL) 9108
1D Compatibility (HY) -2800 + (ID) 2550
Total energy: -139667.0 ( -51.35 by residue)
QMean score : 0.178
|
|
|