Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH
3N0E Chain:A ((45-255))
TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH
General information:
TITO was launched using:
RESULT:
Template:
3N0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56295 for 1637 contacts (-34.4/contact) +
2D Compatibility (PS) -23171 + (NN) -21719 + (LL) 0
1D Compatibility (HY) -18000 + (ID) 4300
Total energy: -123485.0 ( -75.43 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3N0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N0E-query.scw
PDB file :
Tito_Scwrl_3N0E.pdb
: