Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQAL-HLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGA-YDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPDREGSFYVYDVKVDD------RPAFHRKMEAAGIMAGLVSRRNDEHSCVAHLRT---------SLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 1MDZ Chain:A ((10-379)) | -FLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGER------YGIPVIEDAAHATGTSYKGRHIGARGT-AIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD-------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL-------HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217039 for 3036 contacts (-71.5/contact) +
2D Compatibility (PS) -37028 + (NN) -14599 + (LL) 1320
1D Compatibility (HY) -18400 + (ID) 5750
Total energy: -291496.0 ( -96.01 by residue)
QMean score : 0.445
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