Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVY-GIVKPSDTVPAGVDDY-------SYLVAADDQDGTIIFFKAEGQTVIIKYTSQRNTKLKAKALTLSQLKKEFYQTRSQKREVDDYVAGLRTE
2JK9 Chain:A ((122-188))
-------------------------DLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFI-VDGQYMGVAFRGLKGKKL----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18406 for 303 contacts (-60.7/contact) +
2D Compatibility (PS) -6204 + (NN) -1369 + (LL) 4808
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -25821.0 ( -85.22 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_2JK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JK9-query.scw
PDB file :
Tito_Scwrl_2JK9.pdb
: