Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDTGLRKRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLG-ALCFAELGTMITKSGGEYPYLMEAYGPIPAY---LFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIV-VKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLV-IVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQS-----QAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE |
| 3OB6 Chain:A ((8-337)) | ---------------------------HKVGLIPVTLMVSGNIMGSGVFLLP----ANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACW-IGAIAMVVIGVGYLSY----FFPILKDPLVLTITCVVVLWIFVL--LNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLG---TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDT----AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OB6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -262804 for 2850 contacts (-92.2/contact) +
2D Compatibility (PS) -32106 + (NN) 3137 + (LL) 5024
1D Compatibility (HY) -28400 + (ID) 4050
Total energy: -319199.0 ( -112.00 by residue)
QMean score : 0.238
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