Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKA-KLLNQVLVNLPTSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA
3LNC Chain:A ((22-103))
-------------------------MLKSVGVILVLSSPSG----TVANKLLE----NIVKSVSVTTRAARKGEKEGKDYYFVDREEF-LRLCSNGEIIEHA--EVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMM
General information:
TITO was launched using:
RESULT:
Template:
3LNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14468 for 334 contacts (-43.3/contact) +
2D Compatibility (PS) -7910 + (NN) -136 + (LL) 3456
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -23608.0 ( -70.68 by residue)
QMean score : 0.033
(partial model without unconserved sides chains):
PDB file :
Tito_3LNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LNC-query.scw
PDB file :
Tito_Scwrl_3LNC.pdb
: