Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPVEEFVAGWISGALGLVLGHPFDTVKVRLQTQ---------TTYRGIVDCMVKIYRHESLLGFFKG------MSFPIASIAVVNSVLFGVYSNTLLVLTATSHQERRAQPPSYMHIFLAGCTGGFLQAYCLA-PFDLIKVRLQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPTVGIYFITYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWVA---ATPLDMIKSRMQMDGLRRR---VYQGMLDCMVSSIRQEGLGVFFRGVTINSARAFPVNAVTFLSYEYLLRWWG |
| 1OKC Chain:A ((8-279)) | --LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL---NFAFKDKYKQIFL-----GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVG----KGAAQREFTGLGNCITKIFKSDGLRGLYQG-FNVSVQG---IIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87395 for 1750 contacts (-49.9/contact) +
2D Compatibility (PS) -25188 + (NN) -1560 + (LL) 1936
1D Compatibility (HY) -13600 + (ID) 3550
Total energy: -129357.0 ( -73.92 by residue)
QMean score : 0.152
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