Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GEGVSYSDGHFLTKSGGVINFRKTRVTSITITILGN----YGLRVVNGELQNTPLTFKGADFKSSTLKDELLIPLEGAVQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVTVHPFLSLTA
1JMX Chain:A ((282-363))
GKARLLAVQPAFIKAGG-----ESEITLVGSGLAGKPDLGAGVEVTE-VLEQTPTLVR---LKARAAADA----KPGQREVAVGTLKGVNLAVYD--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5708 for 540 contacts (-10.6/contact) +
2D Compatibility (PS) -8501 + (NN) -1283 + (LL) 5432
1D Compatibility (HY) -800 + (ID) 700
Total energy: -11560.0 ( -21.41 by residue)
QMean score : 0.136
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: