Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------GALTTSTRQGSRVVGFMDFIIALGWQIIP----SNIRYIYILNCSQFMPTSDVTTIYFQADSGLESIFVMDSPFYASCTQQLPDKTIKTYGVTIS-KKQSIISINFSSSLEPNIMVSAWTASITRTQ-----
1QUQ Chain:A ((45-171))
HIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKID----DMTAAPMDVRQWVDTN------------TVVP---PETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSK
General information:
TITO was launched using:
RESULT:
Template:
1QUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44617 for 640 contacts (-69.7/contact) +
2D Compatibility (PS) -11442 + (NN) -4482 + (LL) 1664
1D Compatibility (HY) 800 + (ID) 650
Total energy: -58727.0 ( -91.76 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1QUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QUQ-query.scw
PDB file :
Tito_Scwrl_1QUQ.pdb
: