Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQQD---GARITQRGVTHWTNPKSIVSIYFYLHQP-TTADLSLYAKGHSEIKVSYGKKGFKVNLQSNDFTKVPVGSIDIRQAGYVRIDLQGVSKSGEGFGEIKQLIADNVTG-KSNYVKDFSDYWGRRGPSVHL---GYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYNSPTERRILFSVWSPFDTQNPKEIPDDQKIKLLRQGKDVHIG--EFGNEGSGGQSYLKYPWKAGNTYKFLMQIRPDGNGNTTYTA---YFYATDEKEWKLIASFLRPKTNTWYKR------PHSFLENFSPEQGYLS--REVFFGNQWARSKE------------GKWSRLTD--ATFTHDATASAQVRLDYQGGNTKDNRFYLKMGGFFNESVPMGTKFYCKPTGKE--PEIDWEALKQL----------- |
| 1BN8 Chain:A ((22-420)) | -----------------ADLGHQTLG-SNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVS---ALGKETNTTPKIIYIKG--TIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDP----STWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGS-GTNAKVVGGNFQIK--SDNVIIRNIEFQDAYDYFP----------------------------QWDPTDGSSGNWNSQYDNI-TINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDA---SNGANYITMSYNYYHDHDK-----SSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BN8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10614 for 2771 contacts (3.8/contact) +
2D Compatibility (PS) -36777 + (NN) -12058 + (LL) 5312
1D Compatibility (HY) 0 + (ID) 2750
Total energy: -35659.0 ( -12.87 by residue)
QMean score : 0.144
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