Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MKKVLLLV-FLSLTWLSASAQALVPITWTAYGLTFEAPKG----------------ILVEEDTEETFLLNNSRFYITIQSLDSDGMTKSDLKSVLKDYANDDGVK-DQSAVQEFELPQFFGTYLKGSCETDHCLYACLMTKAAGSGFYISIIYSKENENIAEKILKSFTMEE
1KBV Chain:A ((13-163))
ELPVIDAVTTHAPEVPPA-IDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATG------QGGGAAATFTAPGRTSTFSFKALQ-PGLYIY-HCAVAP------VGMHIANGMYGLILVEPK-EGLPKV---------
General information:
TITO was launched using:
RESULT:
Template:
1KBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13453 for 908 contacts (-14.8/contact) +
2D Compatibility (PS) -13749 + (NN) -794 + (LL) 2052
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -28194.0 ( -31.05 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_1KBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KBV-query.scw
PDB file :
Tito_Scwrl_1KBV.pdb
: