Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--GHMKFT-DQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTVPA--GVDDYSYLVAADDQDGTI-----IFFKAEGQTVIIKYTSQRNTKLKAKALTLSQLKKEFYQ-TRSQKREVDDYVAGLRTE-----
1JMX Chain:A ((364-494))
KVEEVKVVPAFSIARIGENGAS----VPKVQGRFEAEAWGKDANGQPLRIGYLPASWKVEPFNERAVEDEDVKFAGKMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9170 for 795 contacts (-11.5/contact) +
2D Compatibility (PS) -11737 + (NN) 570 + (LL) 296
1D Compatibility (HY) 2000 + (ID) 900
Total energy: -18941.0 ( -23.83 by residue)
QMean score : 0.165
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: