Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNS--MPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH |
2PQ4 Chain:B ((1-35)) | -------------------------------------------------------------------------------------MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQ------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1604 for 145 contacts (11.1/contact) +
2D Compatibility (PS) -3434 + (NN) -2251 + (LL) 11652
1D Compatibility (HY) -2400 + (ID) 350
Total energy: 4821.0 ( 33.25 by residue)
QMean score : -0.131
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