Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MFSSVAHLARANPFNTPHLQLVHDGLGDLRSSSP--------------GPTGQPRRPRNLAA---AAVEEQY---SCDYGSGRFFILCGL--GGIISCGTTHTALVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGF--YEVFKVLYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGLTQ |
| 4RKS Chain:A ((21-337)) | TYRSIGSTAYPTIGVVLLGGIANPVTRTPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRYSSVFEEAFGTKTVSYSSQNFGILSGSSDAGAASIGAAILGLKP--------DLDPHDVENDLRAVSESAGRSLFGGLTITWSDGFHAYTEKILDPEAFSGYSIVAFAFDYQRNP------SDVIHQNIVRSDLYPARKKHADEHAHMIKEYAKTNDIKGIFDLA-----QEDTEEYHSILRGVGVNVIRENMQKLISYLKLIRKDY-----------------WNAYIVTGGSNVYVAVESENADRLFSIENT---------------------------------------FGSKKKMLRIVGGAWHRRPE---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100255 for 2202 contacts (-45.5/contact) +
2D Compatibility (PS) -28905 + (NN) 4135 + (LL) 6712
1D Compatibility (HY) -7600 + (ID) 2850
Total energy: -128763.0 ( -58.48 by residue)
QMean score : 0.212
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