Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGFEELLEQVGGFGPFQLRNVALLALPRVLLPLHFLLPIFLAAVPAHRCALPGAPANFSHQDVWLEAHLPREPDGTLSSCLRFAYPQALPNTTLGEERQSRGELEDEPATVPCSQGWEYDHSEFSSTIATESQWDLVCEQKGLNRAASTFFFAGVLVGAVAFGYLSDRFGRRRLLLVAYVSTLVLGLASAASV----SYVMFAITRTLTGSALAGFTIIVMPLELEWLDVEHRTVA-GVLSSTFWTGGVMLLALVGYLI----RDWRWLLLAVTLPCAPGILS-LWWVPESARWLLTQGHVKEAHRYLLHCARLNGRPVCEDSFSQEAVSKVAAGERVVRRPSYLDLFRTPRLRHISLCCVVVWFGVNFSYYGLSLDVSG-LGLNV---YQTQLLFGAVELPSKLLVYLSVRYAGRRLTQAGTLLGT---ALAFGTRLLVSSDMKSWSTVLAVMGKAFSEAAFTTAYLFTSELYPTVLRQTGMGLTALVGRLGGS-LAPLAA-LLDGV-WLSLPKLTYGGIALLAAGTA-LLLPETRQAQLPETIQDVERKSAPTSLQEEEMPMKQVQN |
1PW4 Chain:A ((62-442)) | --------------------------------------------------------------------------------------------------------------------------------------------RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN-CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-IEEYKN---------D---------------------TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222681 for 2725 contacts (-81.7/contact) +
2D Compatibility (PS) -35132 + (NN) -2448 + (LL) 12592
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -259419.0 ( -95.20 by residue)
QMean score : 0.129
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