Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MRPALAVGLVFAGCCSNVIFLE---LLARKHP-----GCG-NIV--TFAQFLFIAVEGFLFEADLGRKPPA-------IPIRYYAIMVTMFFTV---SVVNNYALNLN--------IAMPLHMIFRSGSLI------ANMILGIIILKKRYSIFKYTS--IALVSVGI----------FICTFMSAKQVTS-------QSSLSENDGFQAF----VWWLLGIGALTFAL--------------LMSARMGIFQETLYKRFGKHSKEA-LFYNHALPLP------GFVFLASDIYDHAVLFNKSELYEIPVIGVTLP----IMWFYLLMNIITQYVC-----IRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVFI--------GTLMYTEVWNN-LGTTKSEPQKDSKKN----------------- |
| 4O2X Chain:A ((5-483)) | EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYA-FKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALAAAQTNAAANLEKIKKLRNVITSAWKVILYNDDIHNFTYVTDVIVKVVGQISKAKAHTITVEAHSTGQALILSTWKSKAEKYCQELQQNGLTVSIIHES |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O2X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263001 for 2285 contacts (-115.1/contact) +
2D Compatibility (PS) -32901 + (NN) 7923 + (LL) 204
1D Compatibility (HY) -2800 + (ID) 2850
Total energy: -293425.0 ( -128.41 by residue)
QMean score : 0.029
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