Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGSHPYFNLPDSTHPSPPSTPPSLHWHQRCQPSDATNGLLVALL-GGGLPAGFVGPLSRMAYQASNLPSLELVICRCLFHLP--IALLLKLRGDPLLGPPDI-----RGRTCFCALLNVLNIGCAYSAVQVVPTGNAATVR-KHSSTVCSAILTLCLESQVLSGYDWCGLLGS-IL--GLIIIVGPG-LWTLQ--EGTTGVYTGL--GYVQAFLGGLALSLGLLVYRSLHFPSCLPTVAFLSGLVGLLGSVP-GLFVLQSPVLPSDLLSWSCVGAVGILTLVSF-TCVGYAVTKAHPAL-VCAVLHSEVVMALILQYFML-------------------------------------------------HETVAPSDIMGAGVVLGSIA-II-TARNLICERTGKVEE-------------- |
1EYB Chain:A ((2-440)) | --AELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGHVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQK--GNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGFLPGGGSLHSTMTPHGPDADCFEKASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRLKSHFTPNSRN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EYB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221524 for 2407 contacts (-92.0/contact) +
2D Compatibility (PS) -35136 + (NN) -2494 + (LL) 720
1D Compatibility (HY) 11200 + (ID) 1700
Total energy: -248934.0 ( -103.42 by residue)
QMean score : 0.003
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