Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MEAVETGERPTFGAWDYGVFALMLLVSTGIGLWVGLARGGQRSAEDFFT--GGRRLAALPVGLSLSASFMSAVQVLGVPSEAYRYGLKFLWMCLGQLLNSVLTALLFMPVFYRLGLTSTYEYLEMRF-SRAVRLCGTLQYIVATMLYTGIVIYAP---ALILNQVTGLDIW----ASLLSTGIICT-FYTAVGGMK-AVVWTDVFQV--VVMLSGFWVVLARGVMLVGGPRQVLTLAQNHSRINLMDFNPDPRSRYTFWTFVVGGTLVWLSMYGVNQAQVQRYVACRTEKQAKLALLINQVGLFLIVSSAACCGIVMFVFYTDCDPLL-LGRISAPDQYMPLLVLDIFED------LPGVPGLFL----ACAYSGTLSTASTSINAMAAVTVEDLIKPRLRSLAP---RKLVIISKGLSLIYGSACLTVAALSSLLGGGVLQGSFTVMGVISGPLLGAFILGMFLPACNTPGVLAGLGAGLALSLWVALGATLYPPSEQTMRVLP--SSAARCVALSVNASGLLD---------------PALLPANDSSRAPSSGMDASRPALADSFYAISYLYYGALGTLTTVLCGALISCLTGPTKRSTLAPGLLWWDLARQTASVAPKEEVAILDDNLVKGPEELPTGNKKPPGFLPTNEDRLFFLGQK------ELEGAGSWTPCVGHDGGRDQQETNL---------------- |
| 4RKN Chain:A ((43-702)) | MQMTKEAREIIAHPKGTKESRGVISLQDYIVEEQAMYDWLFKN-----HPIFTKYGGKTVGKLVVK-DRGEEWIEEGRGNDFSKASKRSG--------GEGFSSMM---------YRVARNSTLQYPNKFIGPEKCGECHPAQYETWSRSRHATTIRFPGEHPEVNNKLND-PVFDKDTASILPQGITPDVVYCTVGHIRTKFGFFDAWLLRGTYHVEGGLLKNGTGQIVAGGNQWQRTWALN--------LSPEVAKKIKKWVPDFPVT---LEEYGDNGGYVRGLAS-------YAAKYKKSMSFQASTSYCEVCHPWKFDFKNESEFYAALGNAKELQKHTISKGVSCEECHGAGGHLEGGSGLLISNCERCHQRFSYSPDLMRNNPLNAGKPDLALSSKFKSMGPGCGSEGSQTYFTAHYEKGMRCATCHDPHDVTGN--VTGEKGIKGVSYNSEQG-YLSSLY----SKPKLKKECTDCHKEQAYIQSKADTHSKNSCASCHMPFMMSCENFYAIQFQDQAGFDTQRRAHIWKIDVDPARKSLVAGSTSKDPRDGKDWHFERNEEGRNFVDLMWACARTTWADKDQAEAKGCHSPVV--SELKETLHFKDQKQVYNEVMGWQTPVKDKFTQVKVGIQGLYSLLEVKKLAPSDKTRVYELIEKAQDTVDLIEKDGSWGM---HGFKYTKQRLDAAVEYINEAQRIMKKSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -330935 for 4663 contacts (-71.0/contact) +
2D Compatibility (PS) -59107 + (NN) 12937 + (LL) 5084
1D Compatibility (HY) 2800 + (ID) 5550
Total energy: -374771.0 ( -80.37 by residue)
QMean score : 0.109
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