Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ME-AGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRD--------PYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT--
4M5B Chain:A ((1-214))
MHIPEGYLSPQTCAVMGAAMVPVLTVAAKKVNKSFDKKDVPAMAIGSAFAFTIMMFNVPIPGGTTA-------HAIGATLLATTL------GPWAASISLTLALFIQALLFGDGG----ILALGANSFNMA-FIAPFVGYGIYRLMLSLKLNKVLSSAIGGYVGINAAALATAIELGLQPLLFHTANGTPLYFPYGLNVAIPAMMFAHLTVAGIVEAVITGLVVYYLLEHHH
General information:
TITO was launched using:
RESULT:
Template:
4M5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126103 for 1793 contacts (-70.3/contact) +
2D Compatibility (PS) -20407 + (NN) 4044 + (LL) 2260
1D Compatibility (HY) -6400 + (ID) 1500
Total energy: -148106.0 ( -82.60 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_4M5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5B-query.scw
PDB file :
Tito_Scwrl_4M5B.pdb
: