Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------GRIPSPPSKTSLDIAEELQND-KG---------VSFAFQAREEELGA--FTKRTLFAYSGDGLTGPFKAPASAELSSFLTAHPKGRWLIAFPLGTGIVSVDEGILTLEISRSL-PEVGSGSSFYLTEK
1JMX Chain:A ((364-494))
KVEEVKVVPAFSIARIGENGASVPKVQGRFE---AEAWGKDANGQPLRIGYLPASWKVEPFNERAVEDEDVKFA-GKMQADGVFVPGGAGPNPE-RKMMTNNAGNLKVIATLADGG--QTGEGHMIVTVQRWNNPPLP----------
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -830 for 575 contacts (-1.4/contact) +
2D Compatibility (PS) -10407 + (NN) -209 + (LL) 1416
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -12280.0 ( -21.36 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: