Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDE--GARHQGVVAILRWWVAAKKAASYVAEPLE-STVDGDKALVRAKVSGRFPGSPVTLTYSFTIK---DGRIARLEIQ----------
1QJG Chain:A ((1-125))
MNTPEHMTAVVQRYVAALNAGDLDGIVALFADDATVENPVGSEPRSGTAAIREFYANS-LKLPLAVELTQEVRAVANEAAFAFIVSFEYQGRKTVVAPIDHFRFNGAGKVVSMRALFGEKNIHAGA
General information:
TITO was launched using:
RESULT:
Template:
1QJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35084 for 694 contacts (-50.6/contact) +
2D Compatibility (PS) -11327 + (NN) -1892 + (LL) 64
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -50439.0 ( -72.68 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1QJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJG-query.scw
PDB file :
Tito_Scwrl_1QJG.pdb
: