Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYT-DRQAYPLIVVLNAETLMEP-VVSMVRYYEQF-GEMPKCIVVGVYEPKQ-EDVTVV-----------EEVGRPINESARFFEFVSAELVPYIQGKYPIADLKGVIASEEAGFLA-NYYMLAEKKPTFNMIVSLNPVAL---PRMGEEFSHALAAGVPNRLFYY-MATADVE------NKVVYDKAIQFERAMRSAPVHESVE-YHFVDFKGSSVNAAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQ--DWES-LKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 3GFF Chain:A ((11-329)) | -------------------EYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQFDHMASLLQFLSQGTMPQIPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGINVLVGHSFGGLVAMEALR--TDRPLFSAYLALDTSLWFDSPHYLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFADKLTKLAPKGLGFMAK--YYPEETHQSVSHIGLYDGIRHLFKDFAI------------DIYFSKQQVIDQYGVLSERFGHKVTPSQQYLEQLIQYSDRQQLTERKQMLEGLRQHFA--------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154405 for 2271 contacts (-68.0/contact) +
2D Compatibility (PS) -30484 + (NN) -11736 + (LL) 9264
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -196361.0 ( -86.46 by residue)
QMean score : 0.313
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