Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMA-GAFVAVFLLA------MFYEGLKIARESLLRKSQVSIRYNSMPVPGPN-GTILMETHKTVGQQMLSFPHLLQTVLHIIQVV--ISYFLMLIFMTYNG-YLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH
1VR8 Chain:A ((5-141))
KIHHHH----------------HHPPEAYS-----LDTAIFVLETRDYRLSDVKEI-------DSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVL---DLPNMGKFSTVSN---GKKIVAWWR--KNWLFIVEGKNGVEEFVKHVYRVYEEMKQ------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74851 for 828 contacts (-90.4/contact) +
2D Compatibility (PS) -13396 + (NN) -2568 + (LL) 4508
1D Compatibility (HY) -2400 + (ID) 1450
Total energy: -90157.0 ( -108.89 by residue)
QMean score : 0.124
(partial model without unconserved sides chains):
PDB file :
Tito_1VR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VR8-query.scw
PDB file :
Tito_Scwrl_1VR8.pdb
: