Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKQISLPAKLINGGIAGLIGVTCVFPIDLAKTRLQNQQNGQRVYTSMSDCLIKTVRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQLSKDGQKLTLL--------KEMLAGCGAGTCQVIVTTP----MEMLKIQLQDAGRI----AAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTRDLLRSRGIAGLYKGLGATLLRDVPFSVVYFP--------------LFANLNQLGRPASEEKSPFYVSFLAGCVAGSAAAVAVNPCDVVKTRLQSLQRGVNEDTYSG-----ILDCARKILRHEGPSAFLKGAYCRALVIAPLFGIAQVVYFLGIAESLLGLLQDPQA |
| 3SKV Chain:A ((28-384)) | RARADRSVSPTDPALTYRGAVSLQDRDG-WLAPWRAPHEDAYLYFPKGSVGRLAQTSGVRLHLRTDSPWLAVRYEAVGPKPKPGEPQEPALLDVLVDGELARTVELKLDADAELHVDGLPAGDKLVELWLPTLLQFRLAEVRLEAGATLEKDTSSKPHWIHYGDSICHGRGAASPSRTWLALAARAEGLDLQSLSFAADGSHLQPMFARLIRDLPADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELPADDKPTVADYREQVVKVAELLRKHGDQNVHYLD-GMRVWGPERGMELYLEKPDKYPTHPNAVGHEIFAE--SSRREMAALGVLPVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87222 for 2483 contacts (-35.1/contact) +
2D Compatibility (PS) -32889 + (NN) 785 + (LL) 568
1D Compatibility (HY) 2800 + (ID) 2000
Total energy: -117958.0 ( -47.51 by residue)
QMean score : 0.177
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