Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATKTELSPTARESKNAQDMQVDETLIPRKVPSLCSARYGIALVLHFCNFTTIAQNVIMNITMVAMVNSTSPQSQLNDSSEVLPVDSFGGLSKAPKSLPAKSSILGGQFAIWEKWGPPQERSRLCSIALSGMLLGCFTAILIGGFISETLGWPFVFYIFGGVGCVCCLLWFVVIYDDPVSYPWISTSEKEYIISSLKQQVGSSKQPLPIKAMLRSLPIWSICL------GCFSHQWLVST---MVVYIPTYISSVYHVNIRDNGLLSAL-PFIVAWVIGMVGGYLADFLLTKKFRLITVRKIATILGS------------LPSSALIVSLPYLNSGYITATALLTLSCGLSTLCQSGIYINVLDIAPRYSSFLMGASRGFSSIAPVIVPTVSG-----FLLSQD----PEFGWRNVFFLLFAVNLLGLLFYLIFGEADVQEWAKERKLTRL |
| 4D79 Chain:A ((3-268)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVISDAWRQRFGGTARLYGEKALQLFADA-HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTT--------GGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPGFGAATMVTATFGFVAVSHALKKMMAKAARQG---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4D79.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -185176 for 1579 contacts (-117.3/contact) +
2D Compatibility (PS) -22138 + (NN) -4937 + (LL) 14332
1D Compatibility (HY) -400 + (ID) 1900
Total energy: -200219.0 ( -126.80 by residue)
QMean score : 0.211
|
|
|