Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------MKQAGFPLGILLLFWVSYVTDFSLVLLIKGGALSGTDTYQSLVNKTFGFPGYLLLSVLQFLYPFIAMISYNIIAGDTL-----SKVFQRIPGVDPENVFIGRHFIIGLSTVTFTLP--LSLYRNIAKLGK---------VSLISTG------LTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAIQAVGVMS--------FAFICHH-NSFLVYS------SLEEPTVAKWSRLIH--MSIVISVFICIFFATCGYLTFTGFTQG------DLFENYCRNDDLVTFGR-FCYGVTVILTYPME--------CFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTH-SDKIMSCVMLPIGAVVMVF-----GFVMAITNTQ------------DCTHGQEMFYCFPDN-------FSLTNTSESHVQQTTQLSTLNISIFQ- |
| 4GA6 Chain:A ((1-493)) | MKAKIRILDMFSGRYTVLINEEDAKEAKLHPDDLVKIEAGKKAVYGSVAL-SNLVGKGEVGISRDVLDLHNFSEGETVSVIPAGTPESVRYIKKKMHGEKLRKVEIEAIVRDIVDRKLRDIEI-SSFVTALEINGLDMDEIAALTIAMAETGDMLDIDRKPIMDVHSIGGVPGNKTNILVVPIVAAA----GLTIPKTSSRAITSAAGTADVVEVFADVSFSLDEIKRIVEKVGACLVWGGALNLAPADDITIKAERALSIDPTGLMLASIMSKKYAMGSQYVLIDIPTGKGVKVETVEEARSLARDFIELGKRLGQYVEVAITYGGQPIGHTVGPALEAREALSALMTGKGP--------GSLIEKATGLAGILLEMGGVAPAGTGKKMAKEILE--SGKAWEKMKEIIEAQGGDPNIKPEEIPIGDKTYTFTAATSGYVTAIDNRAITAIARAAGAPEDKGAGIELYVKVGEKVKEGDPLFTIHAEHEARLDQAIVLARRTEPIRIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -337858 for 3068 contacts (-110.1/contact) +
2D Compatibility (PS) -40651 + (NN) -6285 + (LL) 1836
1D Compatibility (HY) -6000 + (ID) 3750
Total energy: -392708.0 ( -128.00 by residue)
QMean score : 0.182
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