Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MVLQENGYGVEEDIPTLLMAASSMDDLLAITGFNTCLSIVFYSGGMINNAIASLRNVCISLL--------------------------AGIVLGFFVRYFPSEDQKKITLKRGFLVLITFVSAVLGSQPIGLHGSG-----GLCTLVLHFIEWTKWSQEKMKVQKIITNVWDIFQ-------------PLLFGLVG-------AEVSVSLLESNIVGISVSTLSL-----------------ALCVRILNIYLLMCFAGFSFKEKIFIA-----LAWMPKATVQAVLGPLALETARV-STPHLETYAKDVMTV--AFLAIMITAPNGALLMGILGPKML---TRHYDPSKIKLQLSTLEHH--------------------------------------- |
| 3FGA Chain:B ((1-403)) | PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV----ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK-------YIDQKFVLQLLELFDSEDPRERDFLKTTLHRI-YGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS-DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140508 for 1737 contacts (-80.9/contact) +
2D Compatibility (PS) -27982 + (NN) -10897 + (LL) 1508
1D Compatibility (HY) -22400 + (ID) 2550
Total energy: -202829.0 ( -116.77 by residue)
QMean score : 0.246
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