Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKNSLYIISSLFFACVLFVYATATNFQNSTSARQVKTETYTNTVTNVPIDIRYNSDKYFISGFASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGVGTIEVPLSIEDLPNGLTAVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKIIAVLPTSERITGNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN |
| 1D2O Chain:A ((535-721)) | -------------------------------------------ETTSSIGEKVWDDKDNQDGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTTDINGTTITNKYTPGETSAT--VTKNWDDNNNQDGKRPTEIKV---ELYQDG--------KATGKTAILNE--SNNWTHTWTGLDEKAKGQ-----------QVKYTVEELTKVKGYTTHVDNNDMGNLITTNKYTP--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D2O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 28632 for 1360 contacts (21.1/contact) +
2D Compatibility (PS) -20696 + (NN) -8222 + (LL) 5592
1D Compatibility (HY) 6400 + (ID) 1200
Total energy: 10506.0 ( 7.73 by residue)
QMean score : 0.097
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