Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKMEKKWPFVFNGIVIFCLILLILGMRWQAKKEESEVLNVTESLQKE-----SEITSFSEEEEAVLYMLSALKKNDLDMALRGCAIDETALQINFVKTAEELPGMQLIDLPAPTSDYSYYFPLTSAEMTKAYIEQFEELSTEIPEIETLEVLEIAEKKEKEREEQLAECLAAQEVSELEIYVKCGEQSYRLGFT-----AVQYEKNWKIHSLKEGLLYETDIPACVQMEEMR-EAKKTYVLPNQLTGANY-FQAMPISEKTPQRAVEQFIYAIEKGDLTRALAFATTESSQDTSPELLKKQGEYAKELKTMLYGFLGTEDARLYGKSEEQLNKLRGKLNPEYMVYLDLIKVIPIETEENTETVKQYAGLYSYNGKNYLTGYTLCRQEDGWQIQSLSAPALSLESGEVMRLSKEESRKTSEQSVLKAEKNER |
| 2IVN Chain:A ((1-325)) | --------------MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSL--------DDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVE-ITKMFGVKD----PVGLYVSG-------------------GNTQVLALEGGRYRVFGETLDIGIGNAIDVFARELGLGF--------PGGPKVEKLAEKGEKYIELPYAVKGMDLSFSGLLTEAIRKYRSGKY-----RVEDLAYSFQETAFAALVEVTERAVAHTEKD----EVVLVGGVAAN-NRLREMLRIMTEDRGIKFFVPPYDLC----------RDNGAMIAYTGLRMYKAGIS--FRLEETIVKQKFRTDEVEIVWH------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 32822 for 2858 contacts (11.5/contact) +
2D Compatibility (PS) -32112 + (NN) 660 + (LL) 9640
1D Compatibility (HY) -1600 + (ID) 1850
Total energy: 7560.0 ( 2.65 by residue)
QMean score : 0.057
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