Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKLHLKYLWIVLVACTLTACMNGGGDLAGKWQLRQYQYADGTSEKVDSVFYNFQKGSFSA-----ICLLKDGGLTTFFGNYSLKGAEISIILLPESVNDKNYDTYFGWPEGKCTFKVEDLSYSSLRLEYEGTKSIFRKF
2D1P Chain:B ((1-119))
-----MKRIAFVFST-------APHGTAAGREGLDALLATSALTDDLAVFFIA--DGVFQLLPGQKPDAVLARDYIATFKLLGLYDIE-QCWVCAASLRERGLD-----PQTPFVVEATPLEADALRRELANYDVILRF-
General information:
TITO was launched using:
RESULT:
Template:
2D1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34570 for 843 contacts (-41.0/contact) +
2D Compatibility (PS) -12364 + (NN) -3616 + (LL) 2292
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -56108.0 ( -66.56 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_2D1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1P-query.scw
PDB file :
Tito_Scwrl_2D1P.pdb
: