Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------------MDTQQLYFLNDIGKQKPESIRNRSAACPFCDRENLTDI--LATEGSIIWLKNKFPTLKDTFQTVLIETDNCEDHIA-TYTEEHMRSLIRFSIKHWLNLQKNEEFT---SVILYKNHGP------------FSGGSLHHAHMQIIGMKYVNYLDNVEQDNFQGVIVQKNEHIELNISD--RPIIGFTEFNIIIEDIGCIDELANYIQQTVRY----ILTDFHKGCS-SYNLFFYYLNEKIIC----------KVVP---------RFVVSPLYVGYKIPQVSTKIEDVKIQLAAYFTKQNDA---IIHKKIE |
| 1F8F Chain:A ((4-371)) | LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPA--YCSEFFGRNFSGADSEGNHALCVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTW---GAGAVGLSALLAAKVCGAS------IIIAVDIVESRLELAKQLGATHVINSKTQ---DPVAAIKEITD-GGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSR---------KGITLKPIIKIA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -35927 for 1579 contacts (-22.8/contact) +
2D Compatibility (PS) -25194 + (NN) -4846 + (LL) 2656
1D Compatibility (HY) -8400 + (ID) 1850
Total energy: -73561.0 ( -46.59 by residue)
QMean score : 0.149
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