Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLNLSVDEVLTTTRSVR-KRLDFDKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANARGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGREDE-SAVG----GVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAYTQGIDFR-------PAKRLPAESVTHWNGW
2ISK Chain:A ((24-227))
----AAVYRAIETRRDVRDEFL--PEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMF----S-----G---ERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIF----HESEIKAILGIP-DHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGW
General information:
TITO was launched using:
RESULT:
Template:
2ISK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104288 for 1351 contacts (-77.2/contact) +
2D Compatibility (PS) -20665 + (NN) -12344 + (LL) 1140
1D Compatibility (HY) -9600 + (ID) 2200
Total energy: -147957.0 ( -109.52 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_2ISK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ISK-query.scw
PDB file :
Tito_Scwrl_2ISK.pdb
: