Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKKTVRF-GEQAAVPAIGLGTWYMGEHAAQRQQEVAALRAGIDHGLTVIDTAEMYAD-------GGAEEVVGQAIRGL--RDRVVLVSKVYPWHA------------GKAAMHRACENSLRRLQTDYLDMYLLHWRG------------------DIPLQETVEAMEKLVAEGKIRRWGVSNLDIEDMQALWRTA---DGEHCATNQVLYHLASRGIEYDLLPWCQQHSLPVMAYCPLAQA---GRLRDGLFQH----------------------SDIINMANARGITVAQLLLAWVIRHPGV-LAIPKAASIEHVVQNAAALDIVLSGEELAQLDRLYPPPQRKNRLDMV |
| 1LQA Chain:A ((1-346)) | --MQYHRIPHSSLEVSTLGLGTMTF-GEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYTYPAP---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1LQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -169678 for 2293 contacts (-74.0/contact) +
2D Compatibility (PS) -29761 + (NN) -13976 + (LL) 728
1D Compatibility (HY) -18800 + (ID) 4000
Total energy: -235487.0 ( -102.70 by residue)
QMean score : 0.516
|
|
|