Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQQDGARITQRGVTHWTNPKSIVSIYFYLHQPTTADLSLYAKGHSEIKVSY-----GKKGFKVNLQSNDFTKVPVGSIDIRQAGYVRIDLQGVSKSGEGFGEIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYNSPTERRILFSVWSPFDTQNPKEIPDDQKIKLLRQG--KDVHIGEFGNEGSGGQSYLKYPWKAG--NTYKFLMQIRPDGNGNTTYTAYFYATDEKEWKLIASFLRPKTNTWYKRPHSFLENFSPEQGYLSREVFFGNQWARSKEGKWSRLTDATF--THDATASAQVRLDYQGGNTKDNRFYLKMGGFF--NESVPMGTKFYCKPTGKEPEIDWEALKQL------------------ |
| 1Q35 Chain:A ((1-318)) | -------------------------------------------------------------------ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADGL---VDRVKQEGEL-SPADVLL----TVDISRVMEIVNADLAQKID-SKVLEKN---------------------------IPAQFRDSNDQWFGLTT--RARVIYTS----------------KDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKP------QGGDRDQVKAIKEGICDYSIGNSYYYGKMLDD-EKQKSWAEAAIIN---FPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYL-SGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFDDFSE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Q35.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 37552 for 2401 contacts (15.6/contact) +
2D Compatibility (PS) -29561 + (NN) -4123 + (LL) 7804
1D Compatibility (HY) -6800 + (ID) 1700
Total energy: 3172.0 ( 1.32 by residue)
QMean score : 0.152
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