Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRYRPFGSTGVAVSALTLRLADNPR------LRANDWRALVFTALENGVNSFQIDGDAP--ELLKGAGEAFASVERHLLFLTWRLRG----D--AKQLGPHTLDALKRSAFEGLSLDYLDLLLINDPQSASLPMAFESGLQDLQKGRALRGLGVASRGDID-PGLLANDLVTAVSSPYNLSSGWAERHRIRQASQNNFAVIGEDFWPQALREVADKAPPKP--S-------FWQR--RTDPLADVGGYEFLTNTPGWSAEDICLGYALTEPSLATVRVTADNRQEIERLAAVVERDLPTGVCAQIEMARFSAQEREKAARRP |
1PYF Chain:A ((2-308)) | -KKAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGEVLREFNREDVVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGKYTEDTTFPEGDLRNEQEHFKGERFKENIRKVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKL-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127508 for 2320 contacts (-55.0/contact) +
2D Compatibility (PS) -29238 + (NN) -3899 + (LL) 1396
1D Compatibility (HY) -11200 + (ID) 2250
Total energy: -172699.0 ( -74.44 by residue)
QMean score : 0.361
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