Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------MGDHAWSFLKDFLAGGV--AAAVSKT-----AVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK-------EQGFLSFWRGNLANVIRYFP-----------TQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFV----------YPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDG-LRGLYQGFNVSVQGIIIYR-------------AAYFGVYDTAKGMLPDPKNVHIFVSWMIAQ------SVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYT-----------GTVDCWRKIAK--------DEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV---- |
| 4J1Q Chain:A ((20-445)) | HMERLMLEPVWEKQNEELSYTEHIIVLFETERSVTDSIASHMKDARVITLNEAVGHIAERYQCYMQNIFELLQSKVRKLSAGRIIIQAIVPLEKEKQLFAGVSGLFK-TAEIEFSKLTAQVIEIEKPEEMIDLHLKLKDDSRRPFDKQIRYEAGYRFVKGWREMVDTLHMPWRDEGVYLITGG---AGSLGLLFAKEIANRT--GRSTIVLTGRSVLSEDKENELEALRSIGAEVVYREADVSDQHAVRHLLEEIKERYGTLNGIIHGAGSSKDRFIIHKTNEEFQEVLQPKVSGLLHVDECSKDF---PLDFFIFFSSVSGCLGNAGQADYAAANSFMDAFAEYRRSLAASKKRFGSTISFNWPLWEEGGMQVGAEDEKRMLKTTGMVPMPTDSGLKAFYQGIVSD------KPQVFVMEGQLQKMKQKLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J1Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146010 for 2122 contacts (-68.8/contact) +
2D Compatibility (PS) -30068 + (NN) -5865 + (LL) 1000
1D Compatibility (HY) -10400 + (ID) 3250
Total energy: -194593.0 ( -91.70 by residue)
QMean score : 0.322
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