Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKQISLPAKLINGGIAGLIGVTCVFPIDLAKTRLQNQQNGQRVYTSMSDCLIKTVRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQLSK-DGQKLTLL--KEMLAGCGAGTCQVIVTTP--MEMLKIQLQDAG--RIAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTAT-----QLTRDLLRSRGIAGLYKGLGATLLRDVPFSVVYFPLFANLNQLGRPASEE----KSPFYVSFLAGCVAGSAAAVAVNPCDVVKTRLQSLQRGVNEDTYSGILDCARKILRHEGPSAFLKGAYCRALVI---APLFGIAQVVYFLGIAESLLGLLQDPQA |
| 2Y23 Chain:A ((6-312)) | --TKEV-----VVNVDDDGVISLNFECDKMTPKSEFSWSKD----YVSTEDSPRLEVESKG-------NKTKMTF----KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC-----------NVLLKCKVANIKKETHIVWYKDEREISVDE------KHGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y23.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91499 for 1769 contacts (-51.7/contact) +
2D Compatibility (PS) -29265 + (NN) 7335 + (LL) 2368
1D Compatibility (HY) -7200 + (ID) 2550
Total energy: -120811.0 ( -68.29 by residue)
QMean score : 0.082
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