Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------MGGLTASDVHPTLGVQLFSAGIAACLA----DVITFPLDTAKVRLQVQGECPTSSVIRYKGVL--GTITAVVKTEGRMKLYSGLPAGLQRQISSASLRIGLYDTVQEFLTAGKETAPSLGSKILAGLTTGGVAVFI---GQPTEVVKVRLQAQSHLHGIKPRYT---GTYNAYRIIATTEGLTGLWK-GTTPNLMRSVIINCTELVTYDLMKEAFVKNNILADDVPCHLVSALIAGFCATAMSSP------VDVVKTRFINSPPGQYKSVPNCAMKVFTNEGPTAFFKGLVPSFLRL----------GSWNVIMFV-------CFEQLKRELSKSRQTMDCAT-------------------------------------------------- |
| 3VS8 Chain:A ((7-410)) | HPNSAVLADFIPVQLAKPVPQRITLELTAYGFARAHCLSNGITDEEGFVQVYKTVKEKFDKYAVSPAQIKQRQLVYFPKLTDIRFGDGNFDIADPEPDQAHLRLFDIKKDPRGADLKTRHESYAKVVGKGLEQMFEGTLEAPDDLIHVTCSGYLAPSPAERMVADRGWFETTVTHSYNMGCYGAFPAIKMAHGMLASAQWGATPPKTR-VDIAHTELMSAHNNIAESRVDNIISATLFSDGLIKYSVYPEDELRRQGLRGLRILAMSEHLLPDSADTMTGVPGSHQFVMTLSPLVPAIIKRHVRAFAVDLLRRAGMDFERDKDALSFAIHPGGPKIVDHVQEELGLAEDQVAISKSVFLENGNMSSSTIPHILKAYLEEATVGTRIACLGFGPGLTAAGLVLEKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VS8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82443 for 2180 contacts (-37.8/contact) +
2D Compatibility (PS) -32282 + (NN) -5228 + (LL) -28
1D Compatibility (HY) 2800 + (ID) 2150
Total energy: -119331.0 ( -54.74 by residue)
QMean score : 0.096
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