Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------MGPNAVELTTDQAWC--LADVLGAGSYPWVLAITPPYSDHSQRSAFLAAQSAELTRMGV-VNSAGAVD--PRVAQWITTVCRA---------------------TQWLDLRFVSGPGDLLRGMVARRSE---ETVVALRNAQLVTFTAMDIGHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRNGAPLAEVLEFLGVP---------------------------------------PSARPLVESVFDG----------RRTYVEIVAGE--HRDGHRVTTEVGVSIIDTPHGRILVHPTKAFD------GEWISTFTPGSADAIAMAVERLTASLPSGSWFPDQPLTRDFDEDAATHREPVLQRRTQKA |
| 1GSO Chain:A ((-2-426)) | MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLK----IFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKAKGVIVAMTLEEAEAAVHDMLAGNAFGDAGH--RIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDK--DTGPNTGGMGAYSPAPVVTDDVHQRTME-RIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLAQVVTNGGRVLCVTALGH--TVAEAQKRAYALM------------TDIHWDDCFCRKDIGWRAIER- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GSO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 28672 for 1708 contacts (16.8/contact) +
2D Compatibility (PS) -28099 + (NN) -7049 + (LL) 1716
1D Compatibility (HY) 14400 + (ID) 650
Total energy: 8990.0 ( 5.26 by residue)
QMean score : 0.047
|
|
|