Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KDAELQEREYHLKELREQLAKQTVAIAELTEELQSKCIQLNKLQ
3NMD Chain:A ((20-60))
---SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQ
General information:
TITO was launched using:
RESULT:
Template:
3NMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1975 for 154 contacts (12.8/contact) +
2D Compatibility (PS) -4786 + (NN) -5860 + (LL) 132
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -11239.0 ( -72.98 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_3NMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NMD-query.scw
PDB file :
Tito_Scwrl_3NMD.pdb
: