Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SNINKAKVASVESDYSSIKSAALSYYSDTNKIPVTPDGQTGLNVLETYMESLPDKADIGGEYKLIKVGNKLVLQIGKDGEGVTLTEAQSAKLLSDIGKDKIYTGVTGDNFGEQLKDTTKIDNK-----ALYIVLIDNTVMDSTK
1ZTD Chain:A ((1-125))
SEIDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALELTGLSKNLRRVD---KHAKGDYAEALIAKAWLMG---LISEREAVEIIKK-------------NLYPEVLDFSKKKEAIGRALAPLLVIISERLYSSQV
General information:
TITO was launched using:
RESULT:
Template:
1ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5174 for 861 contacts (6.0/contact) +
2D Compatibility (PS) -12633 + (NN) -4462 + (LL) 240
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -15881.0 ( -18.44 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZTD-query.scw
PDB file :
Tito_Scwrl_1ZTD.pdb
: