Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQQDGARITQRGVTHWTNPKSIVSIYFYLHQPTTADLSLYAKGHSEIKVSYGKKGFKVNLQSNDFTKVPVGSI-DIRQAGYVR-IDLQGVSKSGEGFGEIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEW-----FYNEITVPKEGETMHSYYMAAGFGEGYFGMQYNSPTE-----------RRILFSVWSPFDTQN--PKEIPDDQKIKLLRQGKDVHIGEFGNEGSGGQSYLKYPWKAGNTYKFL-MQIRPDGNGN---TTYTAYFYATD----EKEWKLIASFLRPKTNTWYKRPHSFLENFSPEQGYLSREVFFGNQWARSKEGKWSRLTDATFTHDATASAQVRLDYQGGNTKDNRFYLKMGGFFNESVPMGTKFYCKPTGKE-PEIDWEALKQL------- |
| 1URD Chain:A ((1-370)) | --------------------QTITVWSWQTG------PELQDVKQIAAQWAKAHGDKVIVVDQSS--------NPKGFQFYATAARTGK-----GPDVVFGMPHDNNGVFAEEGLMAPVPSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKK-------LVPQPPQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVS----GPWDTADIE---KAKIDFGVTPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQI---PALLSVQRSSAVQSSPTF------------KAFV-EQLRYAVPMPNIPQMQA------------VWQAMSILQNII---AGKVSPEQGAKDFVQNIQKGIMA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1URD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7170 for 2769 contacts (-2.6/contact) +
2D Compatibility (PS) -35783 + (NN) -16406 + (LL) 5164
1D Compatibility (HY) -3200 + (ID) 1850
Total energy: -59245.0 ( -21.40 by residue)
QMean score : 0.124
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