Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDEGA-----RHQGVVAILRWWVAAKKAAS--YVAEPLESTVD-GDKALVRAKVSGRFPGSP--VTLTYSFTIKDGRIARLEIQ------------
1TUH Chain:A ((26-156))
NEAEQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHVLKSDDGRVIGIHRNTAERGGKRLDVGCCIVFEFKNGRVIDGREHFYDLYAWDEFWR
General information:
TITO was launched using:
RESULT:
Template:
1TUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38470 for 708 contacts (-54.3/contact) +
2D Compatibility (PS) -11511 + (NN) -2252 + (LL) 0
1D Compatibility (HY) 400 + (ID) 1000
Total energy: -52833.0 ( -74.62 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1TUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TUH-query.scw
PDB file :
Tito_Scwrl_1TUH.pdb
: