Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AARYDDVLYFPASRYPETGAHISDAIKAGHADVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLNGYADGTRILFIVQ------------------
1FNF Chain:? ((1142-1235))
----------PLS--PPTNLHLEA---NPDTGVLTVSWERSTT---------PDITGY-RITT---TPTNGQQGNSLEEVVHADQSSC------TFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12608 for 477 contacts (-26.4/contact) +
2D Compatibility (PS) -8563 + (NN) -7787 + (LL) 2224
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -29984.0 ( -62.86 by residue)
QMean score : 0.157
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: