Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD-------------GQTIASASDDKTVKLWNR-NGQLLQTLTGH
1VYH Chain:C ((109-337))
-SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSEGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH
General information:
TITO was launched using:
RESULT:
Template:
1VYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42708 for 1637 contacts (-26.1/contact) +
2D Compatibility (PS) -22977 + (NN) -23451 + (LL) -28
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -108764.0 ( -66.44 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1VYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VYH-query.scw
PDB file :
Tito_Scwrl_1VYH.pdb
: