Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKLYTTLLIACLAAGFTACNDDDCEDLHLGNLAHYPNVLKGTFPTESQVLELGETLEITPELLNPEGATYSWLVNGKE-----YSTEPTFSYKIDNPCRADLSCIIKNKYGKVEMSTSFSSNHNFSKGFFYVA--------DGTFNFYDTEKKTAYQDCYASLNAGKTLGIGNYDSANIIHSN---GKFYLLVGTSTSNRDHFYIVDAKTLYYENSAVVGANLSGLTILNEQY-GLVTGD-G------IRRIDLKSLNNV-RIKNERLLCFYNSIIY-NGKVLSNDTYKDESKVKYYDVNELIAAKEGEAPAVTELDIIQK--QKINFVLAKDGN-VYTLESADNGCNIVKI--KNDFTLE---KVFANF-QPA---KG---PYHSSPTIGMVA---------SETENIIYLVST-DGAIYKYILGDSDSLKAPFIA-------------AESGVSITAPLQLNQQSGELYVTYTEERKDESKIVVYSKDGKVLHTVDCGESVPSQILFNN |
| 3TC9 Chain:A ((10-428)) | ---------------------------G--DFDPNKPVVISEFSPK---EGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGNTKYDL---KDG-----PFDDC---G---GF-GGAVWLSFDPKNHNHLYLVGE-----QHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNS--WNAGQVFRYDFTT---------QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ--HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD-EYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR----ENRRIRKIGY---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TC9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116485 for 2728 contacts (-42.7/contact) +
2D Compatibility (PS) -38242 + (NN) -3201 + (LL) 4332
1D Compatibility (HY) -2400 + (ID) 2200
Total energy: -158196.0 ( -57.99 by residue)
QMean score : 0.276
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