Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPK-------EQGVLSFWRGNLANVIRYFP-----------TQALNFAFKDKYKQIFLGGVDKRTQFWLYFAGNLASGGAAGATSLCFV--YPLDFARTRLAADVGKAGAEREFRG--------LGDCLVKIYKSDG-IKGLYQGFNVSVQGIIIYR-------------AAYFGIYDTAKGMLPDPKNTHIVISWMIAQTVT------AVAGLTSYPFDTVRRRMMMQSGRKGTDIMYT-----------GTLDCWRKIAR--------DEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYT---- |
| 4J1Q Chain:A ((20-445)) | HMERLMLEPVWEKQNEELSYTEHIIVLFETERSVTDSIASHMKDARVITLNEAVGHIAERYQCYMQNIFELLQSKVRKLSAGRIIIQAIVPLEKEKQLFAGVSGLFK-TAEIEFSKLTAQVIEIEKPEEMIDLHLKLKDDSRRPFDKQIRYEAGYRFVKGWREMVDTLHMPWRDEGVYLITGG---AGSLGLLFAKEIANRT--GRSTIVLTGRSVLSEDKENELEALRSIGAEVVYREADVSDQHAVRHLLEEIKERYGTLNGIIHGAGSSKDRFIIHKTNEEFQEVLQPKVSGLLHVDECSKDF---PLDFFIFFSSVSGCLGNAGQADYAAANSFMDAFAEYRRSLAASKKRFGSTISFNWPLWEEGGMQVGAEDEKRMLKTTGMVPMPTDSGLKAFYQGIVSD------KPQVFVMEGQLQKMKQKLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J1Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131045 for 2088 contacts (-62.8/contact) +
2D Compatibility (PS) -30321 + (NN) -6893 + (LL) 964
1D Compatibility (HY) -10800 + (ID) 3150
Total energy: -181245.0 ( -86.80 by residue)
QMean score : 0.291
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